- Dark editorial hero: 'Manual pairing.' (80px serif, italic pairing)
- 'AUTO-MATCH PAUSED' amber status pill on the right
- Ghost 'PAIRED' watermark behind the hero
- Dramatic torn-page fold with shadow + perforation + 'PAIR THEM BY HAND' label
- Paper plane with title block ('RECONCILIATION · SHEET 01' / 'Pair them.' 96px)
- Folio system (§ 01 Vital signs, § 02 The match, § 03 The action)
- KPI strip with 3 paper-toned tiles (Unmatched claims / remits / in queue)
- Two-column pairing surface with paper cards, blue/amber accent rails
and a center vertical bridge that flips to green-merge when both selected
- Active row uses paper-tinted blue (claim) or amber (remit) backgrounds
- Action footer with italic 'Ready to pair' / 'Now pick a remit' states
- Empty state: 'Nothing pending.' with circle-dashed icon on cream
- Footer: 'END OF SHEET 01 / CYCLONE · RECONCILIATION / N ROWS PENDING'
- Dark editorial hero: 'Parse an X12 file.' (80px serif, italic X12)
- Ghost 'DROP' watermark behind the hero
- Dramatic torn-page fold with shadow + perforation + 'DROP & PARSE' label
- Paper plane with title block ('INGESTION · SHEET 01' / 'Drop a file.' 96px)
- Right column accepts indicator (.txt / 837P · 835 / backend status pill)
- Folio system (§ 01 The drop, § 02 The stream, § 03 The archive)
- Paper-toned drop zone, selects, and claim cards (replaces dark surface-2)
- Stream section with progress bar (gradient fill) and 2-column totals
- Recent batches list with 'batches' count in footer
- Empty state with inbox icon when no batches exist
- Footer: 'END OF SHEET 01 / CYCLONE · INGESTION / N BATCHES'
Update _get_typed in the plan to:
- raise immediately on 4xx (terminal)
- retry on 5xx and RequestError (transient)
- use BACKOFF_S = (1.0, 2.0) instead of (1.0, 2.0, 4.0)
- use RuntimeError instead of assert for the context-manager guard
Also add test_4xx_is_terminal_not_retried to the plan's test list.
The verbatim plan returned an un-entered CycloneClient from the fixture,
causing all 3 tests to fail with 'use async with CycloneClient(...)'.
Convert fixture to async generator that enters the context. Verified by
running pytest tests/test_api_client.py -v → 3 passed.
The verbatim plan's test asserted isinstance(log, structlog.stdlib.BoundLogger),
but cache_logger_on_first_use=True makes get_logger return a lazy proxy on
first call. Test now uses duck-typing (hasattr('bind') + callable). Also
dropped the misleading caplog assertion and unused logging/structlog imports.
- conftest.py example now uses SAMPLE_837P constant so sample_837p_bytes
reads the file (not the directory).
- Note that Python 3.13 satisfies requires-python >= 3.11 if 3.11 isn't
installed.
Adds pure local validators for the 10-digit NPI Luhn checksum (CMS-
published algorithm with the '80840' NPPES prefix) and 9-digit EIN
format (rejects reserved prefixes 00/07/80-89). No NPPES round-trip,
no IRS e-file lookup — catches the 99% typo case at parse time.
Surface:
- cyclone.npi.is_valid_npi / is_valid_tax_id / normalize_tax_id
- CLI: 'cyclone validate-npi <npi>' and 'cyclone validate-tax-id <ein>'
- API: GET /api/admin/validate-provider?npi=&tax_id=
- Parser validator: new R021_npi_checksum rule (warning, not error,
to keep test fixtures with placeholder NPIs ingestible)
- minimal_837p.txt fixture NPI updated from '1234567890' to the
Luhn-valid '1993999998' so strict-mode CLI parses still pass
Tests:
- test_npi.py — 27 cases (Luhn math, valid/invalid NPIs, EIN cases,
normalize_tax_id edge cases)
- test_api_validate_provider.py — 4 cases (both valid, both invalid,
omitted NPI, omitted tax_id)
- test_cli_validate.py — 8 cases (valid/invalid for both subcommands,
exit codes, malformed inputs)
- test_validator.py — 4 new R021 cases (valid Luhn silent, bad Luhn
warning, skipped when format bad, skipped when NPI missing)
Total: 923 tests pass.
13 tasks implementing the spec: pre-flight baseline, atomic-move of
store.py into store/__init__.py, 10 module extractions (exceptions,
records, orm_builders, ui, write, batches, claim_detail, acks, backups,
inbox, providers), and final verification + single atomic commit.
Working tree stays dirty through Tasks 1-11; final commit happens at
end of Task 12 per the spec's single-atomic-commit requirement.
Each task ends with a focused test-suite verification (not full baseline
— that's Task 12 Step 1's job) so regressions are caught early.
Step 4 of the file-split refactor series. Targets backend/src/cyclone/store.py
(2,412 lines) which sits on the hot path of parse-999, parse-277ca,
reconciliation, and inbox match/unmatch.
Decisions locked:
- Public surface: cyclone/store/ subpackage + thin facade (__init__.py
re-exports every currently-importable name).
- Class shape: module functions for bodies, CycloneStore keeps its current
method signatures as 1-line delegations.
- Helper distribution: dedicated utility modules (records, orm_builders,
ui, exceptions).
13 target modules total; largest is write.py at ~210 lines. Zero public API
changes, zero test changes. Single atomic commit migration; rollback is a
single git revert.
Three pure-ASGI middlewares close completeness-review gaps §3.1.4
(no body/rate limits) and §3.1.25 (no security headers):
- BodySizeLimitMiddleware — rejects oversized uploads (50 MB
default, CYCLONE_MAX_BODY_BYTES override). 413 on over-cap
Content-Length and on chunked reads that cross the cap.
- RateLimitMiddleware — sliding-window per-IP limiter (300/min
default, CYCLONE_RATE_LIMIT_PER_MIN override). 429 over the
window. /api/health is exempt.
- SecurityHeadersMiddleware — stamps X-Content-Type-Options,
X-Frame-Options, Referrer-Policy, Permissions-Policy, and a
strict Content-Security-Policy on every response.
Every 413/429 also writes a tamper-evident api.request_rejected
event into the SP11 audit chain so an operator can correlate
rejections with the SP18 JSON logs.
GET /api/health is rewritten to return a subsystem snapshot:
DB connectivity (SELECT 1), MFT scheduler state, backup scheduler
state, live pubsub subscriber counts, last batch id + timestamp.
Returns status='degraded' if any subsystem is unhappy; per-subsystem
errors surfaced in the respective dict.
Cyclone.pubsub.EventBus.stats() — new method for live subscriber
counts.
13 new tests (test_security.py) + 1 updated (test_api.py health
endpoint). All 883 backend tests pass.
Cyclone previously emitted stdlib default-formatted log lines that
operators couldn't parse with anything beyond grep. SP18 replaces
that with:
- JsonFormatter: newline-delimited JSON, ISO-8601 ms timestamps,
structured "extra" dict, exception tracebacks serialized as a
single string.
- CycloneDevFormatter: tabular format for tail -f in dev.
- PiiScrubber: logging.Filter that redacts NPIs, SSNs, DOBs,
patient names — both inline in the message ("npi 1881068062")
and via PHI-keyed extras ({"dob": "1980-04-12"}).
- setup_logging(): idempotent entry point used by the API lifespan
and CLI main; respects CYCLONE_LOG_LEVEL/FILE/JSON/NO_PII_SCRUB.
- CLI --log-format=json|dev + --log-file=… flags.
- Migrate 9 highest-value log sites in scheduler/backup_scheduler/
backup_service to use extra={...} (input_filename, claims, parser,
backup_id, db_fingerprint, etc.).
34 new tests (test_logging_formatter + test_logging_scrubber +
test_logging_setup). All 867 backend tests pass.
Adds automated encrypted backups of the live SQLite file. Closes the
'no backup automation' gap called out in the completeness review
(docs/reviews/2026-06-20-cyclone-completeness-review.md §3.1 #3) and
gives the SP16 MFT scheduler a recovery path when the MFT pipeline
loses days of inbound 999/277CA work in a single crash.
Architecture
------------
- AES-256-GCM with PBKDF2-HMAC-SHA256 (200,000 iters, 16-byte salt)
- Online backups via SQLite's .backup() API — no app downtime
- Salt + passphrase persisted to macOS Keychain (separate accounts
backup.passphrase + backup.salt) so the key is reproducible across
processes
- Two-step restore (initiate → confirm) with a one-shot 64-char hex
token; the second call disposes + rebuilds the engine only if the
token matches within a 5-minute TTL
- Tamper-evident audit chain (SP11) — db.backup_created,
db.backup_failed, db.backup_pruned, db.backup_restored,
db.backup_passphrase_set
- BackupService + BackupScheduler + module-level singletons
- 8 admin endpoints + 6 CLI subcommands
- Auto-start opt-in via CYCLONE_BACKUP_AUTOSTART=true; default
interval 24h, default retention 30 days
- Fallback posture: if no separate passphrase is set and SQLCipher
is enabled, the key is derived from the SQLCipher DB key with a
fixed salt + WARNING log (degraded but never plaintext)
New modules
-----------
- cyclone.backup — PBKDF2, AES-GCM, sidecar format
- cyclone.backup_service — create_now / list / verify / restore / prune / status
- cyclone.backup_scheduler — async tick loop with audit hooks
New surface
-----------
- 8 admin endpoints under /api/admin/backup/*
- 6 CLI subcommands under cyclone backup (init-passphrase, create,
list, verify, restore, prune, status)
- Migration 0012_backups.sql + DbBackup ORM
- store.add_backup_pending()
Tests
-----
- 14 unit tests in test_backup_crypto.py (key derivation, encrypt/
decrypt round-trip, tampered ciphertext, wrong passphrase, sidecar
round-trip, filename format)
- 19 tests in test_backup_service.py (create/list/verify/restore/
prune/status, error handling, fallback key, module singleton)
- 14 API tests in test_api_backup.py (all 8 endpoints + scheduler
endpoints, two-step restore, error responses)
- 10 tests in test_backup_scheduler.py (tick / start / stop /
audit / coalescing / module singleton)
- 5 CLI tests in test_cli_backup.py (create / list / verify /
restore confirm prompt / prune confirm prompt /
init-passphrase minimum-length check)
Total new tests: 62. All pass. Full backend suite: 833 passed,
9 skipped (gitignored prodfiles), 1 warning.
Design doc: docs/superpowers/specs/2026-06-21-cyclone-encrypted-backup-design.md
README: new 'Encrypted Backups (SP17)' section, SP17 entry in
Roadmap, retention default documented in §Project layout.
Adds an asyncio-based background scheduler that polls the Gainwell
MFT inbound path, downloads new files, and routes them through the
appropriate parser (999 / 835 / 277CA / TA1). Idempotent (re-ticks
and restarts skip already-processed files via the new
processed_inbound_files table). Crash-safe (per-file try/except so
one bad file doesn't stop the loop).
Lifespan auto-configures from the seeded dzinesco clearhouse's SFTP
block; auto-start is opt-in via CYCLONE_SCHEDULER_AUTOSTART.
Five admin endpoints added:
GET /api/admin/scheduler/status
POST /api/admin/scheduler/start
POST /api/admin/scheduler/stop
POST /api/admin/scheduler/tick
GET /api/admin/scheduler/processed-files?status=&limit=
20 new tests (15 unit + 5 API).
Self-review nits from the router-split commit:
- All four new files lacked a trailing newline (PEP 8 / POSIX).
- acks.py was lazily importing ParseResult999 / serialize_999 inside
get_ack_endpoint. Hoist to module-level — there's no import cycle
(acks.py does not import from cyclone.api), so the imports are safe
to do once.
No behavior change. Targeted tests (test_acks + test_health + test_api_gets)
still pass 41/41.
Step 2 (first half) of the architecture satisfaction loop. api.py
shrank from 2595 to 2452 lines (-143) by extracting three read-only
resource groups into cyclone.api_routers:
- health.py: GET /api/health (1 endpoint)
- acks.py: GET /api/acks, GET /api/acks/{ack_id} (2 endpoints)
- ta1_acks.py: GET /api/ta1-acks, GET /api/ta1-acks/{ack_id} (2 endpoints)
Each router owns its endpoint bodies + the small UI-shape helper that
goes with them (_ack_to_ui, _ta1_to_ui, _serialize_ta1_from_row). The
helpers stay in the router file rather than being shared because each
is only used by its own endpoints.
api.py now ends the app-wiring section with three include_router()
calls. The new package is named cyclone.api_routers (not
cyclone.api.routers) to avoid the Python package-vs-same-named-module
ambiguity that would shadow the existing cyclone.api module.
Verifies: 41 targeted tests (test_acks, test_health, test_api_gets)
pass, full pytest is 8 failed / 735 passed / 16 skipped — identical
to clean main baseline. Live curl against the running server:
GET /api/health -> 200, GET /api/acks -> 200, GET /api/ta1-acks -> 200.
See /tmp/refactor-cyclone.md for the full plan.
Adds in-place key rotation for the encrypted DB at rest (HIPAA
sec.164.308(a)(4) - periodic key rotation).
- db_crypto.rotate_db_key(): opens with old key, issues PRAGMA rekey,
reopens with new key, verifies schema survived (table-count sanity).
- db_crypto.generate_db_key(): fresh 256-bit CSPRNG hex key.
- db_crypto.fingerprint(): SHA-256[:8] of a key, for the operator to
compare across rotations.
- db.dispose_engine() + db.reinit_engine(): SP15 plumbing. The
rotation endpoint disposes the pooled connections (SQLCipher
refuses to rekey while another connection holds the file), runs
the rekey, then rebuilds the engine with the new key from the
Keychain.
- API: POST /api/admin/db/rotate-key with module-level threading.Lock
to serialize rotations. 400 when encryption not enabled, 409 when
a rotation is already in flight, 503 on rekey or Keychain failure
with a reason that tells the operator what to do next.
- Engine uses NullPool when SQLCipher is enabled: the default
QueuePool returns connections to a shared queue that any thread
can pull from, which breaks SQLCipher's thread affinity. NullPool
trades connection reuse for thread safety, the only correct
behavior under FastAPI's per-request threadpool.
- Audit event db.key_rotated with old/new fingerprints and
table_count, written after the engine is rebuilt so the new key
proves it can take new writes.
- previous key is stashed to a second Keychain account so the
operator can roll back if the new key turns out to be broken.
Tests:
- test_db_crypto.py: 12 new tests for generate/fingerprint/rekey
mechanics (5 require SQLCipher at runtime; skipped otherwise).
- test_api_rotate_key.py: 6 new tests for endpoint wiring
(encryption-required, Keychain update, audit event, rekey-failure
rollback, Keychain-write-failure 503, concurrent-rotation 409).
Tyler
sp15-bot