CycloneStore split precedent (SP21) — lift three helpers from
scheduler.py + api.py into one module. Both callers will switch
to this in Task 6. The new package also defines HandleResult
and the HANDLERS registry; handle_999 / handle_ta1 / handle_277ca
/ handle_835 fill in over Tasks 2-5.
The registry is lazy + best-effort: register_handlers() catches
broad Exception so a partial-modification SyntaxError in one
in-flight handler module can't break scheduler or API import.
11 tests added; existing suite unchanged (1 failed + 2 errors
pre-existing in test_provider_extended_response.py are not
introduced by this commit).
Mirrors the existing admin_username / admin_pw pattern so the dev
compose loads SFTP creds from /tmp/cyclone-test-secrets/sftp_password
when present. Falls back to the CYCLONE_SFTP_PASSWORD env var if the
file is missing. Pre-existing env-var support from SP25+26 unchanged.
Two related fixes land together because the UI was reporting
"1 accepted 1 rejected" for every 999 even though every inbound file
Gainwell ships has IK5=A.
1. Gainwell's MFT uses IK5 where the X12 005010X231A1 spec calls
for AK5 (the per-set accept/reject segment). The parser only
recognized AK5, so set_responses[0].set_accept_reject.code
defaulted to 'R' and the count summary showed all rejections.
_consume_ak2 now accepts either AK5 or IK5; the orchestrator's
segment-skip set picks up IK5 too. A new fixture
(minimal_999_ik5_gainwell.txt) is a verbatim copy of one of the
files in the FromHPE inbound staging dir.
2. _ack_count_summary (api + scheduler) now trusts the per-set
IK5 codes over the functional-group AK9. Gainwell's AK9 is
internally inconsistent — the per-claim IK5=A but the AK9
reports accepted=1, rejected=1, received=1 (sum exceeds
received). Trusting the per-set codes restores the right
answer: accepted=1, rejected=0, code='A'.
3. The Acks page now has a TA1 envelope register alongside the
999 register. TA1s are the lower-level sibling of the 999
(one row per inbound ISA/IEA). The backend surface (parser,
store, API at /api/ta1-acks) was already in place; this
adds the UI: Ta1Ack type, listTa1Acks API method, useTa1Acks
hook, and a Ta1AcksSection card with KPIs + table.
After reprocessing 1056 cached 999s through the new code: every row
shows code='A' with accepted=1, rejected=0 — matches the Gainwell
portal's per-claim accepted state. The user's earlier observation
("the claims look to be accepted in the portal") was correct: the
underlying claim state was always fine, only the displayed count was
wrong.
- backend/src/cyclone/parsers/parse_999.py | 21 ++-
- backend/src/cyclone/api.py | 11 +-
- backend/src/cyclone/scheduler.py | 13 +-
- backend/tests/test_parse_999.py | 32 ++++
- backend/tests/fixtures/minimal_999_ik5_gainwell.txt
- src/types/index.ts | 32 ++++
- src/lib/api.ts | 62 +++++-
- src/hooks/useTa1Acks.ts | 26 +++ (new)
- src/pages/Acks.tsx | 209 +++++++++++++++++++-
Gainwell's MFT ships every 999 with the same ISA interchange
control number (`000000001`) and one 999 ack covers a whole
batch, not a single claim — so the AK2 set_control_number
(patient_control_number) is the same for the ~96 999s in a
batch. With the old synthetic-id formula (`999-{icn}`), all 385
daily acks collapsed onto a single row the operator couldn't
distinguish.
The new formula is `999-{pcn}-{filename_hash8}` (or
`999-{icn}-{filename_hash8}` for envelope-only 999s without an
AK2). The PCN gives the operator a human-readable handle to the
claim batch; the 8-char hash of the inbound filename guarantees
uniqueness within a batch. Fits in the VARCHAR(32) source_batch_id
column (max 22 chars).
Also surface `patient_control_number` in /api/acks list response
(extracted from raw_json's set_responses[0].set_control_number)
and in the Acks UI as the primary label, with the synthetic id
shown dimmed after a middle dot. The detail endpoint already
exposed raw_json for the full 999 parse tree.
Three changes that unblock the daily inbound pull from Gainwell's
FromHPE MFT path:
1. INBOUND_RE now accepts both 'TP' and 'tp' prefixes via inline
(?i:TP) scoping — case-folding the whole pattern would let
lowercase '837p' / tracking IDs through, which is invalid HCPF.
The rest of the pattern is still case-sensitive.
2. _list_inbound_paramiko skips *_warn.txt entries. Gainwell's MFT
drops ~583 advisory text-format notes in the same inbound dir;
they come first alphabetically and were padding every poll with
~80 min of pointless downloads.
3. New SftpClient.list_inbound_names() + download_inbound() pair
gives a metadata-only listing and on-demand fetch. The
scheduler's existing full-listing path still works (now without
the warn padding); the new path is what the new
/api/admin/scheduler/pull-inbound endpoint and the
'cyclone pull-inbound' CLI use to fast-target a date range
without paying the cost of a full ~6000-file download.
Scheduler.process_inbound_files() runs the same per-file pipeline
as a regular tick on the pre-fetched list, so dedup via
processed_inbound_files still applies.
Tests added in test_filenames.py (lowercase + mixed-case cases),
test_sftp_paramiko.py (warn skip + no-download listing), and
test_scheduler.py (process_inbound_files idempotency).
With this, the daily 385-file pull for 20260624 completes in
seconds via 'docker exec cyclone-backend-1 python -m cyclone
pull-inbound --date 20260624 --block dzinesco' (or the equivalent
POST to /api/admin/scheduler/pull-inbound?date=20260624).
In real (paramiko) mode, `_download_and_parse` called
`client.read_file(f.name)` with a bare filename. paramiko's
`sftp.open(f.name)` opens at the SFTP root, not at `paths.inbound`
(FromHPE) — so the scheduler would fail to download any file in real
mode even with the path swap from the previous commit.
But this round-trip is also unnecessary: `_list_inbound_paramiko`
already downloads each entry into the local cache (cache_path) and
returns it as `InboundFile.local_path` as part of the listing pass.
Reading from disk is faster than re-fetching and avoids the path bug.
Stub mode was already reading from `f.local_path`. Now both modes do,
which is the simpler invariant.
Verified: 36 tests pass (test_scheduler, test_api_scheduler, test_sftp_stub,
test_sftp_paramiko).
The dzinesco SP9 seed had `paths.inbound` and `paths.outbound` mapped to
the wrong Gainwell MFT directories:
- paths.outbound was FromHPE/ (HPE sends files FROM here TO us — inbound)
- paths.inbound was ToHPE/ (we send files TO here — outbound)
So `/api/clearhouse/submit` was writing 837P claims to FromHPE (where
HPE puts acks/835s) and the SP16 scheduler was polling ToHPE (where our
claims go). 999 / TA1 / 835 files in the real FromHPE inbox were
unreachable.
Semantics per operator (2026-06-24):
- FromHPE = HPE/Gainwell → us = 999, TA1, 835 (inbound)
- ToHPE = us → HPE/Gainwell = 837P claims (outbound)
**Runtime code (the actual fix):**
- backend/src/cyclone/store.py — SP9 seed paths flipped
- backend/src/cyclone/edi/filenames.py — docstring corrected
**Test fixtures + assertions (would otherwise fail on the new seed):**
- backend/tests/test_clearhouse_api.py
- backend/tests/test_providers_seed.py
- backend/tests/test_sftp_stub.py — incl. inbound dir paths
- backend/tests/test_sftp_paramiko.py
- backend/tests/test_store_update_clearhouse.py
- backend/tests/test_api_clearhouse_patch.py
- backend/tests/test_scheduler.py
- backend/tests/test_api_scheduler.py
**Docs (text-only — keeps the codebase self-consistent):**
- README.md
- docs/reference/co-medicaid.md
- docs/superpowers/specs/2026-06-20-cyclone-multi-payer-npi-sftp-design.md
**Operator action required after merge:** the existing clearhouse row in
`~/.local/share/cyclone/cyclone.db` was seeded with the old wrong
paths. Easiest recovery:
1. `rm ~/.local/share/cyclone/cyclone.db` and let `ensure_clearhouse_seeded` re-run on next boot, OR
2. PATCH /api/clearhouse with the new `paths` block (the SP25
reconfigure hook picks it up live, including by the running scheduler).
**Verification:**
- 82 tests in the affected files pass (test_clearhouse_api, test_providers_seed,
test_sftp_stub, test_sftp_paramiko, test_store_update_clearhouse,
test_api_clearhouse_patch, test_scheduler, test_api_scheduler, test_filenames).
- Full backend suite: 1029 pass + 36 pre-existing order-dependent flakes
unrelated to this change (verified by running the same tests in isolation).
The backend Dockerfile only installed the [sqlcipher] extra, so
paramiko wasn't on the path inside the container. SP25 + SP26's
real-mode SFTP client needs paramiko to connect to the Gainwell
MFT — the scheduler tick surfaced this as
'No module named paramiko' on the very first /api/admin/scheduler/tick
against the dzinesco clearhouse with stub=false.
Install both extras ([sqlcipher,sftp]) in builder and runtime stages.
Bring the SP25 SFTP Polling Enablement (PATCH /api/clearhouse,
scheduler hot-reload, env-var-first secret lookup) and SP26
SFTP Password File Companion (Docker secret _FILE tier) onto
the v1.0.0 release branch so the production stack can actually
flip the Gainwell MFT poll from stub → real.
Conflict resolved in docker-compose.yml: kept both the SP26
CYCLONE_SFTP_PASSWORD_FILE env var and the new 'Always bind
to 0.0.0.0' comment.
The matrix_gate dependency was added to ~50 routes (clearhouse, all
/api/admin/*, /api/config/*, /api/eligibility/*, /api/parse-999/ta1/277ca,
/api/batches/{id}/export-837, /api/payer-rejected/acknowledge, etc.)
but the PERMISSIONS matrix was only populated for ~25 of them. Default-
deny therefore returned 403 to every authenticated role on the rest,
including the SFTP admin endpoints needed for MFT polling.
Roles:
- Admin-only: /api/clearhouse* (SFTP creds + dzinesco identity), all
/api/admin/* (audit-log, backup, scheduler, db rotate, reload-config,
validate-provider)
- All authenticated: /api/batch-diff, /api/config/*, /api/payers/*
- Write (admin + user, no viewer): /api/parse-999/ta1/277ca, the
/api/batches POST prefix (regenerates X12 from DB rows), and
/api/eligibility/* (270 build / 271 parse)
Unblocks /api/clearhouse, /api/admin/scheduler/*, /api/admin/backup/*,
and the rest of the admin surface so MFT polling and live verification
can proceed.
The PERMISSIONS matrix only listed the POST /api/acks entry (parse-999
ingest). The GET list + detail endpoints for 999 / TA1 / 277CA acks
were missing, so the matrix_gate (default-deny) returned 403 to every
authenticated role, breaking the 999 ACKs / TA1 / 277CA inbox pages.
Add the three GET entries as ALL_ROLES — they're read-only metadata
surfaces that every authenticated operator needs to see. Add a
regression test that logs in as admin via the public route and
exercises the matrix; the existing test_existing_endpoints_require_auth
suite only checks the unauthenticated 401 path, which is why this slipped
through.
Fixes the live-verification 'Couldn't load ACKs from the backend /
forbidden' error reported against the UI.
Reachability is controlled by the host firewall / compose port
publishing, not the bind address. Backend, compose, and docs all
now default to 0.0.0.0 so the API is reachable from the frontend
container, the host, and the LAN without per-env overrides.
Files:
- backend/src/cyclone/__main__.py: default host = 0.0.0.0
- docker-compose.yml: refresh the comment to match the new posture
- CLAUDE.md / README.md / docs/ARCHITECTURE.md / docs/REQUIREMENTS.md:
reframe the bind note accordingly
Marks v1.0.0 launch. Captures the History tab (one-click Re-export
ZIP per 837P row) on top of SP21-SP24 — Drill-Down, Line
Reconciliation, Ubuntu Docker deployment, and auth posture alignment.
Add a second tab to the Upload page that surfaces the persisted batch
archive and lets the user re-download any 837P batch as a ZIP without
re-parsing the original file.
- Backend: /api/batches now carries per-row claimIds (837P only).
835 batches return an empty list, which the UI uses as the signal
to hide the Re-export button on those rows. Avoids an extra
round-trip to /api/batches/{id} per row.
- Frontend: BatchSummary.claimIds added to the list-endpoint type.
- Upload page: page body wrapped in Tabs.Root with a History trigger
that mirrors ?tab= in the URL for deep-link round-trip. The
History tab renders UploadHistory → HistoryTable → HistoryRow with
a one-click Re-export ZIP button per 837P row. The button calls
POST /api/batches/{id}/export-837 with the row's claim ids and
downloads the ZIP via downloadBlob. Falls back to the in-memory
parsedBatches store when the backend returns no rows so the tab
stays useful in sample-data mode.
- Backend tests: claimIds present on 837P rows, empty on 835 rows.
- Frontend tests: 13 tests covering tab switching, URL deep-link,
loading/error/empty states, the 837P-vs-835 button visibility
split, the Re-export happy path, and the failure toast.
The dev-server allow-list (VITE_DEV_ORIGINS = localhost:5173 +
127.0.0.1:5173 + CYCLONE_ALLOWED_ORIGINS) is tight enough that
`allow_credentials=True` is safe — the browser was dropping the
session cookie on cross-origin fetches from the Vite dev server
otherwise. Tight allow-list + credentials is the standard setup.
Appends a 'Live verification' section to the plan with the six bugs
the live bring-up surfaced + their fixes, and the end-to-end smoke
results (login, /api/auth/me, /api/parse-837 with a real 837P,
full test suite 1026 passed).
Two test-only fixes after running test_compose_up_brings_up_healthy_stack
on a non-CI host for the first time:
1. The test only used -f docker-compose.yml, but the production compose
points secrets at /etc/cyclone/secrets/{db.key,admin_username,
admin_pw} — which requires sudo to create. The test then failed with
'bind source path does not exist: /etc/cyclone/secrets/db.key' even
though the stack itself was correctly configured.
Fix: if docker-compose.override.yml exists at the repo root, the
test uses `-f compose.yml -f override.yml` so secrets come from
/tmp/cyclone-test-secrets/. Production CI skips the override.
2. The stack publishes host port 8080. If another local service (e.g.
nocodb on a dev workstation) is bound to 8080, the test fails with
'Bind for 0.0.0.0:8080 failed: port is already allocated' — which is
a confusing failure mode for what's actually a host-state issue, not
a Cyclone bug.
Fix: probe 127.0.0.1:8080 before bringing up; if it's already bound
by something else, skip the test with a clear 'rerun on a fresh host'
message. CI workers don't have this conflict.
Verified end-to-end:
- With port 8080 free: full stack comes up (healthy), pytest passes.
- With port 8080 bound: pytest skips cleanly with the message above.
After the 8-commit SP23 implementation landed, kicking the tires on
`docker compose build && docker compose up -d` (the gated DOCKER_TESTS=1
live test) surfaced five real bugs that don't show up in unit tests:
1. Backend wheel was built from the stub `__init__.py`, not the real
source. The Dockerfile's 'stub __init__, wheel, copy src, wheel
again' pattern silently kept the first wheel's contents — only
`__init__.py` got re-stubbed. The installed package had an empty
`__init__.py`, so `from cyclone import __version__` failed at import
time and the backend kept crashing in a restart loop.
Fix: single `COPY src/` + single `pip wheel`. Comment explains
why the stub trick is gone for good.
2. Backend binds to 127.0.0.1 (intentional — local-only by design,
see CLAUDE.md). But that means the frontend container can't reach
it over the compose bridge network — nginx got 'Connection refused'.
Fix: `CYCLONE_HOST` env var, defaults to 127.0.0.1 (preserves local
posture for non-Docker runs), set to 0.0.0.0 by the docker-compose
backend service. Network isolation is provided by the compose bridge
network (only `cyclone-frontend` joins).
3. Healthcheck probed `/api/healthz` (404 — the route is `/api/health`).
Same in: backend Dockerfile HEALTHCHECK, docker-compose healthcheck,
nginx.conf doesn't have one (frontend proxies through), RUNBOOK.md,
scripts/post-deploy.sh, scripts/smoke.sh.
Fix: `/api/healthz` → `/api/health` everywhere SP23 owns.
4. The auth matrix in `cyclone.auth.permissions` had
`("GET", "/api/healthz"): set()` — which is the WRONG path (the
route is `/api/health`). So even after fixing the healthcheck URL,
the public auth bypass wouldn't have applied to `/api/health` and
it would have been DENY-by-default (fail-closed).
Fix: matrix entry updated to `/api/health`.
5. nginx upstream pointed at `cyclone-backend` (the project+service
name), but compose v2 only resolves the bare service name (`backend`)
over the bridge network. nginx crashed at config-load with 'host not
found in upstream cyclone-backend'.
Fix: `cyclone-backend:8000` → `backend:8000` in nginx.conf + spec
+ plan.
6. Frontend HEALTHCHECK used `http://localhost:8080/`. nginx in the
alpine image listens on IPv6 (per the entrypoint's IPv6-by-default
script), so `localhost` (which prefers IPv6 `::1` in musl) connects,
but the resolved flow inside wget is unreliable. `127.0.0.1` works.
Fix: HEALTHCHECK uses `http://127.0.0.1:8080/`.
Also moves `frontend/Dockerfile` → `Dockerfile.frontend` and
`frontend/nginx.conf` → `nginx.conf` at repo root (because the
frontend lives at the repo root, not in `frontend/`, and compose's
`build.context: .` needs them at the same root as compose.yml).
The frontend's pre-existing `.dockerignore` was empty/unused, so it's
dropped — the root `.dockerignore` covers it.
Adds `docker-compose.override.yml` for local bring-up testing on a
host without sudo. Production uses `/etc/cyclone/secrets/` directly.
Verified end-to-end on this dev host with `DOCKER_TESTS=1`:
- Both containers `(healthy)` within ~60s
- `curl http://localhost:8080/api/health` → 200 with valid JSON
- Login as admin → 200, /api/auth/me → 200
- `POST /api/parse-837` with docs/goodclaim.x12 → 200, batch created
- Full backend test suite: 1014 passed, 9 skipped (prodfiles gitignored)
Eight tests: compose file exists, docker compose config validates, services declare required volumes/restart/healthcheck/ports/depends_on, secrets and volumes tables include the names the operator expects, backend wires CYCLONE_BACKUP_AUTOSTART=1, both Dockerfiles pass . The live bring-up test (compose up + wait for healthy) is gated on DOCKER_TESTS=1 so it skips on bare CI. PyYAML was already a hard dep.
Add _read_secret() helper that prefers *_FILE env vars (the standard Docker-secret pattern) over bare env vars. Strips trailing whitespace from file contents so printf/echo newlines don't break bcrypt verify. Existing CYCLONE_ADMIN_USERNAME + CYCLONE_ADMIN_PASSWORD still work for non-Docker deployments. Add tests/test_auth_bootstrap_file.py covering: file-path read, file-overrides-bare, bare-fallback, whitespace-stripping, missing-file raises.
cyclone-init.sh generates /etc/cyclone/secrets/{db.key,admin_username,admin_pw} with openssl rand, prints the admin password once. post-deploy.sh installs logrotate.d/cyclone and a 5-minute healthcheck cron. smoke.sh brings up + logs in + parses a sample 837 end-to-end. RUNBOOK.md covers daily/weekly/quarterly/annual ops procedures plus the emergency runbook.
12 tasks from worktree bootstrap through single-atomic-merge into main. Backend Dockerfile (multi-stage python:3.11-slim-bookworm + sqlcipher + non-root + healthcheck), frontend Dockerfile (multi-stage node:20-alpine build + nginx:1.27-alpine runtime), docker-compose.yml at repo root with two services + named volumes + Docker secrets, scripts/{cyclone-init,post-deploy,smoke}.sh, RUNBOOK.md, tests/test_docker.py (compose config + Dockerfile parse + optional live bring-up), and a small auth bootstrap extension to read CYCLONE_ADMIN_*_FILE for Docker-secret compatibility. Closes the SP23 spec; see spec section 1.1 for what auth is reused from main vs. what SP23 actually adds.
Nora
tyler
tyler
Cyclone