Follow-up to 7c1be58. pytest-randomly was added to a PEP 735
[dependency-groups] dev block by 'uv add --dev', leaving the
project with two 'dev' groups (the legacy [project.optional-
dependencies] dev and the new [dependency-groups] dev). To get
the full dev env someone had to run 'uv sync --extra dev --group
dev', which is easy to miss.
This commit moves pytest-randomly>=4.1 into the
[project.optional-dependencies] dev list (where pytest,
pytest-cov, pytest-asyncio, and httpx already live) and drops
the [dependency-groups] block. 'uv sync --extra dev' now
installs the full dev toolchain. uv.lock updated accordingly:
the [package.dev-dependencies] and [package.metadata.requires-
dev] sections are gone, and pytest-randomly is part of the
standard dev extra.
Two follow-ups to the v0.2.0 release:
1. Add cryptography>=49.0,<50 to the [project.dependencies] list.
cyclone.backup / cyclone.backup_service import it at module top
level, so it has to be a hard dep — not an extra — or the test
suite fails to collect on a fresh 'uv sync'. A clean install
(without this commit) gets 28 collection errors with no tracked
file changes. This was latent because the original 99M venv
had cryptography installed out-of-band and masked the missing
dep declaration.
2. Add pytest-randomly>=4.1.0 to the dev dep group.
Used to characterize the test suite's order-dependence: under
alphabetic order the suite shows 7 failures; under seed=12345
it shows 34. That variance is evidence of test-order state
interactions, not venv issues. Keeping pytest-randomly in
the dev deps so this can be re-verified on demand.
Note: pytest-randomly was added with 'uv add --dev', which uses
the PEP 735 [dependency-groups] syntax. pyproject.toml now has
two 'dev' groups — the legacy [project.optional-dependencies] dev
= [pytest, pytest-cov, pytest-asyncio, httpx] and the new
[dependency-groups] dev = [pytest-randomly]. To get the full dev
env, run: uv sync --extra dev --group dev. Worth consolidating
in a follow-up.
Cyclone previously emitted stdlib default-formatted log lines that
operators couldn't parse with anything beyond grep. SP18 replaces
that with:
- JsonFormatter: newline-delimited JSON, ISO-8601 ms timestamps,
structured "extra" dict, exception tracebacks serialized as a
single string.
- CycloneDevFormatter: tabular format for tail -f in dev.
- PiiScrubber: logging.Filter that redacts NPIs, SSNs, DOBs,
patient names — both inline in the message ("npi 1881068062")
and via PHI-keyed extras ({"dob": "1980-04-12"}).
- setup_logging(): idempotent entry point used by the API lifespan
and CLI main; respects CYCLONE_LOG_LEVEL/FILE/JSON/NO_PII_SCRUB.
- CLI --log-format=json|dev + --log-file=… flags.
- Migrate 9 highest-value log sites in scheduler/backup_scheduler/
backup_service to use extra={...} (input_filename, claims, parser,
backup_id, db_fingerprint, etc.).
34 new tests (test_logging_formatter + test_logging_scrubber +
test_logging_setup). All 867 backend tests pass.
Nora
Tyler